print

print methods

print,AnnotParam-method

print,BamParam-method

print,RNAseq-method

print,RnaSeqParam-method

An object from class <code><links4class>RNAseq</links4class></code>,
<code><links4class>AnnotParam</links4class></code>,
<code><links4class>BamParam</links4class></code> or <code><links4class>RnaSeqParam</links4class></code>

A logical to have a verbose or not output. Default to FALSE
For object of the <code><links4class>RNAseq</links4class></code> class only.

verbose

Print information about a <code><links4class>RNAseq</links4class></code>,
<code><links4class>AnnotParam</links4class></code>, <code><links4class>BamParam</links4class></code> or
<code><links4class>RnaSeqParam</links4class></code> object.

methods

Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.

Nicolas Delhomme

easyRNASeq

Count summarization and normalization for RNA-Seq data

print methods function

An object from class <code><linkS4class>RNAseq</linkS4class></code>,
<code><linkS4class>AnnotParam</linkS4class></code>,
<code><linkS4class>BamParam</linkS4class></code> or <code><linkS4class>RnaSeqParam</linkS4class></code>

A logical to have a verbose or not output. Default to FALSE
For object of the <code><linkS4class>RNAseq</linkS4class></code> class only.

Print information about a <code><linkS4class>RNAseq</linkS4class></code>,
<code><linkS4class>AnnotParam</linkS4class></code>, <code><linkS4class>BamParam</linkS4class></code> or
<code><linkS4class>RnaSeqParam</linkS4class></code> object.

print methods: Pretty print the content of classes from the easyRNASeq package.

Description

Usage

Arguments

Value